Variant report

Variant	rs62418566
Chromosome Location	chr6:69536582-69536583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10485431	1.00[AFR][1000 genomes]
rs10485432	1.00[AFR][1000 genomes]
rs12524100	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12524957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12525831	1.00[AFR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527569	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12528028	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528362	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529646	1.00[AFR][1000 genomes]
rs12530394	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17399055	1.00[AFR][1000 genomes]
rs17400148	1.00[AFR][1000 genomes]
rs1880177	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs34629272	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3798984	1.00[AFR][1000 genomes]
rs45602231	1.00[AFR][1000 genomes]
rs4706035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4706062	1.00[AFR][1000 genomes]
rs62416367	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62416368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62416395	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62416397	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62416398	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62416399	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62416400	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62416401	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62416402	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62416403	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62416405	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62416406	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418281	1.00[AFR][1000 genomes]
rs62418296	1.00[AFR][1000 genomes]
rs62418299	1.00[AFR][1000 genomes]
rs62418303	1.00[AFR][1000 genomes]
rs62418565	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418567	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418568	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62418570	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62418572	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62418577	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6921402	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7454736	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
2	chr6:69535200-69536800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69535400-69536800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:69535600-69536600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:69535800-69537000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69536000-69536600	Enhancers	Brain Anterior Caudate	brain
7	chr6:69536000-69536600	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr6:69536200-69536600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:69536200-69536600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:69536200-69536600	Enhancers	Brain Angular Gyrus	brain
11	chr6:69536200-69536600	Enhancers	Brain Substantia Nigra	brain
12	chr6:69536200-69536800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:69536200-69536800	Enhancers	Fetal Heart	heart
14	chr6:69536200-69537000	Enhancers	Brain Cingulate Gyrus	brain
15	chr6:69536400-69536800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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