Variant report

Variant	rs45602231
Chromosome Location	chr6:69684916-69684917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69682967..69685609-chr6:69690760..69692583,2	K562	blood:
2	chr6:69683147..69685406-chr6:69688911..69691251,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10485431	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10485432	1.00[AFR][1000 genomes]
rs12524957	1.00[AFR][1000 genomes]
rs12525831	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525989	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527157	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12527549	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12527569	1.00[AFR][1000 genomes]
rs12529646	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399055	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17400148	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17401256	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17401852	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2275209	0.81[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs3798984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706035	1.00[AFR][1000 genomes]
rs4706062	1.00[AFR][1000 genomes]
rs62416368	1.00[AFR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62416770	1.00[AFR][1000 genomes]
rs62416776	0.82[AMR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418281	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418296	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418299	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418566	1.00[AFR][1000 genomes]
rs62418567	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3368681	chr6:69682552-69687715	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603620	chr6:69684850-69691596	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
3	chr6:69684200-69685000	Enhancers	Brain Substantia Nigra	brain
4	chr6:69684200-69685400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:69684200-69686000	Enhancers	Brain Hippocampus Middle	brain
6	chr6:69684200-69686200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69684600-69685000	Enhancers	Brain Angular Gyrus	brain
8	chr6:69684600-69685400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:69684600-69686000	Enhancers	Brain Anterior Caudate	brain
10	chr6:69684600-69686000	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr6:69684600-69686000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr6:69684600-69686200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:69684600-69686200	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:69684800-69685800	Enhancers	Fetal Brain Male	brain

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