Variant report

Variant	rs17401256
Chromosome Location	chr6:69744730-69744731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485428	0.81[AMR][1000 genomes]
rs10485432	0.81[CEU][hapmap]
rs12525831	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs12525989	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12527157	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12527549	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12529646	0.87[CEU][hapmap];0.86[AMR][1000 genomes]
rs17400148	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17401852	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3798984	0.93[CEU][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs45602231	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4706848	0.81[AMR][1000 genomes]
rs62416770	0.90[AMR][1000 genomes]
rs62416776	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62418296	0.82[AMR][1000 genomes]
rs62418299	0.82[AMR][1000 genomes]
rs62418303	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
4	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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