Variant report

Variant	rs12527549
Chromosome Location	chr6:69726620-69726621
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485428	0.81[AMR][1000 genomes]
rs10485431	1.00[AFR][1000 genomes]
rs10485432	0.84[CEU][hapmap];1.00[AFR][1000 genomes]
rs12524957	1.00[AFR][1000 genomes]
rs12525831	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12525989	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527157	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12527569	1.00[AFR][1000 genomes]
rs12529646	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17399055	1.00[AFR][1000 genomes]
rs17400148	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17401256	0.88[CEU][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17401852	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs3798984	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs45602231	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4706062	1.00[AFR][1000 genomes]
rs4706848	0.81[AMR][1000 genomes]
rs62416368	1.00[AFR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62416770	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs62416776	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418281	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs62418296	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62418299	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62418303	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69728600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69721400-69728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:69721400-69728800	Weak transcription	Left Ventricle	heart
8	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
9	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:69725400-69727200	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:69725600-69727000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:69725800-69727400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:69726000-69726800	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:69726200-69727000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:69726400-69727200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:69726600-69726800	Enhancers	HUES6 Cell Line	embryonic stem cell

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