Variant report

Variant	rs12525831
Chromosome Location	chr6:69679961-69679962
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10485431	0.81[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10485432	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12196150	1.00[CHB][hapmap]
rs12524957	1.00[AFR][1000 genomes]
rs12525989	1.00[AFR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527157	1.00[AFR][1000 genomes]
rs12527549	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12527569	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12527597	0.88[CEU][hapmap]
rs12529646	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530394	1.00[CHB][hapmap]
rs17399055	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17400148	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17401256	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs17401852	0.84[CEU][hapmap];1.00[AFR][1000 genomes]
rs17476598	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs1880177	1.00[CHB][hapmap]
rs2275209	0.83[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs3798984	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45602231	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706035	1.00[AFR][1000 genomes]
rs4706062	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs4706744	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs62416368	1.00[AFR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62416770	1.00[AFR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418281	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418303	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418566	1.00[AFR][1000 genomes]
rs62418567	1.00[AFR][1000 genomes]
rs7748808	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7759377	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs7767423	0.88[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
2	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr6:69678200-69684600	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69678200-69684600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:69678400-69684600	Weak transcription	Brain Cingulate Gyrus	brain

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