Variant report

Variant	rs17401852
Chromosome Location	chr6:69770182-69770183
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485428	0.85[AMR][1000 genomes]
rs10485431	1.00[AFR][1000 genomes]
rs10485432	1.00[AFR][1000 genomes]
rs12524131	0.80[AMR][1000 genomes]
rs12525831	0.84[CEU][hapmap];1.00[AFR][1000 genomes]
rs12525989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12527549	0.84[CEU][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12527754	0.80[AMR][1000 genomes]
rs12527828	0.80[AMR][1000 genomes]
rs12529646	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17399055	1.00[AFR][1000 genomes]
rs17400148	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17401256	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs3798984	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs45602231	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs4706062	1.00[AFR][1000 genomes]
rs4706848	0.85[AMR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62416770	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs62416776	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418281	1.00[AFR][1000 genomes]
rs62418296	1.00[AFR][1000 genomes]
rs62418299	1.00[AFR][1000 genomes]
rs62418303	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69763600-69770200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69770000-69775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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