Variant report

Variant	rs62416776
Chromosome Location	chr6:69753911-69753912
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10485428	0.85[AMR][1000 genomes]
rs12524131	0.80[AMR][1000 genomes]
rs12525989	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12527157	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12527549	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12527754	0.80[AMR][1000 genomes]
rs12527828	0.80[AMR][1000 genomes]
rs12529646	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17400148	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17401256	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17401852	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3798984	0.82[AMR][1000 genomes]
rs45602231	0.82[AMR][1000 genomes]
rs4706848	0.85[AMR][1000 genomes]
rs62416770	0.85[AMR][1000 genomes]
rs62418303	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
5	chr6:69753800-69754000	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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