Variant report

Variant	rs12529646
Chromosome Location	chr6:69693788-69693789
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:69688539..69691215-chr6:69691625..69694173,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10485431	0.80[CEU][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10485432	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12196150	1.00[CHB][hapmap]
rs12524957	1.00[AFR][1000 genomes]
rs12525831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525989	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527157	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12527549	0.88[CEU][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12527569	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12527597	0.87[CEU][hapmap]
rs12530394	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs17399055	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17400148	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17401256	0.87[CEU][hapmap];0.86[AMR][1000 genomes]
rs17401852	0.83[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs17476598	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs1880177	0.81[CEU][hapmap];1.00[CHB][hapmap]
rs2275209	0.84[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs3798984	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45602231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706035	1.00[AFR][1000 genomes]
rs4706062	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs4706744	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs62416368	1.00[AFR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62416770	1.00[AFR][1000 genomes]
rs62416776	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418281	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418296	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418299	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418566	1.00[AFR][1000 genomes]
rs62418567	1.00[AFR][1000 genomes]
rs7748808	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs7759377	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs7767423	0.87[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685000-69700000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
4	chr6:69686000-69695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:69686000-69700000	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69686000-69700400	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69686000-69700600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:69686200-69695200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:69686600-69700200	Weak transcription	Brain Substantia Nigra	brain
11	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung
12	chr6:69687800-69700400	Weak transcription	Brain Germinal Matrix	brain
13	chr6:69688200-69721200	Weak transcription	Left Ventricle	heart
14	chr6:69688400-69693800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:69692000-69716600	Weak transcription	Fetal Stomach	stomach

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