Variant report

Variant	rs62418281
Chromosome Location	chr6:69675616-69675617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10485431	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10485432	1.00[AFR][1000 genomes]
rs12524957	1.00[AFR][1000 genomes]
rs12525831	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525989	1.00[AFR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes]
rs12527157	1.00[AFR][1000 genomes]
rs12527549	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12527569	1.00[AFR][1000 genomes]
rs12529646	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399055	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17400148	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17401852	1.00[AFR][1000 genomes]
rs2275209	0.82[EUR][1000 genomes]
rs34580444	1.00[AFR][1000 genomes]
rs3798984	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45602231	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706035	1.00[AFR][1000 genomes]
rs4706062	1.00[AFR][1000 genomes]
rs62416368	1.00[AFR][1000 genomes]
rs62416440	1.00[AFR][1000 genomes]
rs62416449	1.00[AFR][1000 genomes]
rs62416770	1.00[AFR][1000 genomes]
rs62418267	1.00[AFR][1000 genomes]
rs62418270	1.00[AFR][1000 genomes]
rs62418272	1.00[AFR][1000 genomes]
rs62418273	1.00[AFR][1000 genomes]
rs62418276	1.00[AFR][1000 genomes]
rs62418296	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418299	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418303	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418566	1.00[AFR][1000 genomes]
rs62418567	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:69647600-69677800	Weak transcription	Brain Anterior Caudate	brain
5	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
6	chr6:69654400-69677600	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69655000-69677600	Weak transcription	Brain Substantia Nigra	brain
8	chr6:69666600-69677800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
10	chr6:69672200-69675800	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:69674000-69677800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr6:69675000-69676400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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