Variant report
| Variant | rs12527157 |
|---|---|
| Chromosome Location | chr6:69763510-69763511 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs10485428 | 0.85[AMR][1000 genomes] |
| rs10485431 | 1.00[AFR][1000 genomes] |
| rs10485432 | 1.00[AFR][1000 genomes] |
| rs12524131 | 0.80[AMR][1000 genomes] |
| rs12525831 | 1.00[AFR][1000 genomes] |
| rs12525989 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12526204 | 1.00[AFR][1000 genomes] |
| rs12527549 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12527754 | 0.80[AMR][1000 genomes] |
| rs12527828 | 0.80[AMR][1000 genomes] |
| rs12529646 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs17399055 | 1.00[AFR][1000 genomes] |
| rs17400148 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17401256 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs17401852 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs34580444 | 1.00[AFR][1000 genomes] |
| rs3798984 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs45602231 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs4706062 | 1.00[AFR][1000 genomes] |
| rs4706848 | 0.85[AMR][1000 genomes] |
| rs62416440 | 1.00[AFR][1000 genomes] |
| rs62416449 | 1.00[AFR][1000 genomes] |
| rs62416770 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs62416776 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs62418267 | 1.00[AFR][1000 genomes] |
| rs62418270 | 1.00[AFR][1000 genomes] |
| rs62418272 | 1.00[AFR][1000 genomes] |
| rs62418273 | 1.00[AFR][1000 genomes] |
| rs62418276 | 1.00[AFR][1000 genomes] |
| rs62418281 | 1.00[AFR][1000 genomes] |
| rs62418296 | 1.00[AFR][1000 genomes] |
| rs62418299 | 1.00[AFR][1000 genomes] |
| rs62418303 | 1.00[AFR][1000 genomes];0.82[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886137 | chr6:69684850-70095690 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv463148 | chr6:69746054-69781786 | Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv603632 | chr6:69746054-69781786 | Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv603633 | chr6:69748600-69794079 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69753600-69794800 | Weak transcription | Fetal Lung | lung |
| 2 | chr6:69756400-69769000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
| 3 | chr6:69760400-69800200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
