Variant report

Variant	rs12527569
Chromosome Location	chr6:69573241-69573242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10485431	1.00[AFR][1000 genomes]
rs10485432	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12196150	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12524100	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12524957	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12525831	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12526204	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12527549	1.00[AFR][1000 genomes]
rs12527597	0.82[CEU][hapmap]
rs12528028	0.95[EUR][1000 genomes]
rs12528300	1.00[ASN][1000 genomes]
rs12528362	0.97[EUR][1000 genomes]
rs12529646	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs12530394	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399055	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs17400148	1.00[AFR][1000 genomes]
rs17476598	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs1880177	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34580444	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs34629272	0.88[EUR][1000 genomes]
rs3798984	1.00[CHB][hapmap];1.00[AFR][1000 genomes]
rs45602231	1.00[AFR][1000 genomes]
rs4706035	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4706062	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4706744	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs62416367	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416368	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416395	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416397	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416398	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416399	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416400	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416401	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416402	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416403	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416405	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62416406	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62416440	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62416449	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62416770	1.00[AFR][1000 genomes]
rs62418264	1.00[ASN][1000 genomes]
rs62418267	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62418268	1.00[ASN][1000 genomes]
rs62418270	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62418272	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62418273	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62418276	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62418281	1.00[AFR][1000 genomes]
rs62418296	1.00[AFR][1000 genomes]
rs62418299	1.00[AFR][1000 genomes]
rs62418303	1.00[AFR][1000 genomes]
rs62418565	0.91[EUR][1000 genomes]
rs62418566	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62418567	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62418568	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418570	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418572	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62418577	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67653429	1.00[ASN][1000 genomes]
rs6921402	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480159	1.00[ASN][1000 genomes]
rs7454736	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748808	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7759377	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7767423	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020792	chr6:69555181-69578740	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1025548	chr6:69555181-69589956	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69569600-69575400	Weak transcription	Fetal Lung	lung
2	chr6:69569800-69574600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69570400-69574200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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