Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10949382	0.84[ASN][1000 genomes]
rs10949383	0.84[ASN][1000 genomes]
rs11961262	0.82[AMR][1000 genomes]
rs11963177	0.84[ASN][1000 genomes]
rs1240830	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12526558	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12529016	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12529203	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs1262923	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16869947	0.84[ASN][1000 genomes]
rs16879271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16879276	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16879284	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879290	0.84[ASN][1000 genomes]
rs57355941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57489962	0.85[AMR][1000 genomes]
rs59333382	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59690250	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6942123	0.84[ASN][1000 genomes]
rs770940	0.84[ASN][1000 genomes]
rs9350013	1.00[CEU][hapmap]
rs9396704	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16825400-16832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:16826400-16832600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:16828400-16836200	Weak transcription	GM12878-XiMat	blood
4	chr6:16829200-16831400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr6:16829200-16832000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:16829400-16836600	Weak transcription	Right Atrium	heart
7	chr6:16829600-16830800	Enhancers	Liver	Liver
8	chr6:16829600-16831000	Weak transcription	Hela-S3	cervix

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