Variant report

Variant	rs16879276
Chromosome Location	chr6:16825863-16825864
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10949382	0.82[ASN][1000 genomes]
rs10949383	0.82[ASN][1000 genomes]
rs11963177	0.81[ASN][1000 genomes]
rs1240830	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12526558	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12528183	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529016	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12529203	0.80[AMR][1000 genomes]
rs1262923	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16869947	0.82[ASN][1000 genomes]
rs16879271	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16879284	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16879290	0.82[ASN][1000 genomes]
rs57355941	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59333382	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59690250	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942123	0.82[ASN][1000 genomes]
rs770940	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16823800-16826400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:16824400-16826400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:16824600-16826400	Enhancers	Primary hematopoietic stem cells	blood
4	chr6:16824600-16826400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:16824800-16826000	Enhancers	GM12878-XiMat	blood
6	chr6:16824800-16826000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:16825000-16829600	Weak transcription	Liver	Liver
8	chr6:16825400-16832200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr6:16825800-16826200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr6:16825800-16826400	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr6:16825800-16826600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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