Variant report

Variant	rs16869947
Chromosome Location	chr6:16835634-16835635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10949382	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10949383	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10949386	0.85[AMR][1000 genomes]
rs11963177	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12526558	0.85[ASN][1000 genomes]
rs12528183	0.84[ASN][1000 genomes]
rs12529016	0.84[ASN][1000 genomes]
rs16879271	0.84[ASN][1000 genomes]
rs16879276	0.82[ASN][1000 genomes]
rs16879284	0.84[ASN][1000 genomes]
rs16879290	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57355941	0.84[ASN][1000 genomes]
rs59333382	0.84[ASN][1000 genomes]
rs59690250	0.85[ASN][1000 genomes]
rs685355	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6942123	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs770940	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9477235	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16828400-16836200	Weak transcription	GM12878-XiMat	blood
2	chr6:16829400-16836600	Weak transcription	Right Atrium	heart
3	chr6:16831000-16836200	Weak transcription	Fetal Thymus	thymus
4	chr6:16831400-16836600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:16831600-16836200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:16832800-16836000	Weak transcription	Fetal Lung	lung
7	chr6:16832800-16836200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:16832800-16836200	Weak transcription	Adipose Nuclei	Adipose
9	chr6:16832800-16836200	Weak transcription	Fetal Brain Female	brain
10	chr6:16832800-16836200	Weak transcription	Fetal Heart	heart
11	chr6:16833000-16836000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:16833000-16836200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:16833000-16836200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr6:16833200-16836400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:16833400-16836400	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:16833400-16836400	Weak transcription	NH-A	brain
17	chr6:16833400-16836800	Weak transcription	Liver	Liver
18	chr6:16834800-16837000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:16835400-16839000	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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