Variant report

Variant	rs770940
Chromosome Location	chr6:16838006-16838007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:16837398..16840135-chr6:16856372..16858999,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10949382	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10949383	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11963177	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526558	0.85[ASN][1000 genomes]
rs12528183	0.84[ASN][1000 genomes]
rs12529016	0.84[ASN][1000 genomes]
rs16869947	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16879271	0.83[ASN][1000 genomes]
rs16879276	0.81[ASN][1000 genomes]
rs16879284	0.84[ASN][1000 genomes]
rs16879290	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57355941	0.84[ASN][1000 genomes]
rs59333382	0.84[ASN][1000 genomes]
rs59690250	0.85[ASN][1000 genomes]
rs685355	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6942123	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015992	chr6:16469059-16846847	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv538148	chr6:16469059-16846847	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:16835400-16839000	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:16836200-16838600	Enhancers	Fetal Thymus	thymus
3	chr6:16836200-16840000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:16836400-16838400	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr6:16836600-16838400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:16837000-16838400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr6:16837000-16838600	Enhancers	Primary T cells from cord blood	blood
8	chr6:16837000-16839000	Enhancers	Fetal Brain Female	brain
9	chr6:16837200-16838200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:16837200-16838200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:16837200-16838200	Weak transcription	Left Ventricle	heart
12	chr6:16837200-16838400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:16837200-16838400	Weak transcription	Right Ventricle	heart
14	chr6:16837200-16838800	Enhancers	Primary hematopoietic stem cells	blood
15	chr6:16837200-16838800	Enhancers	Brain Germinal Matrix	brain
16	chr6:16837200-16839200	Enhancers	Fetal Lung	lung
17	chr6:16837200-16840400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:16837200-16840800	Weak transcription	NH-A	brain
19	chr6:16837200-16841200	Enhancers	Fetal Heart	heart
20	chr6:16837400-16838400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr6:16837400-16838400	Weak transcription	Right Atrium	heart
22	chr6:16837400-16838600	Enhancers	Primary T cells fromperipheralblood	blood
23	chr6:16837400-16838800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:16837400-16839200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr6:16837400-16840000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:16837400-16840400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:16837400-16841000	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr6:16837400-16849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:16837600-16838200	Weak transcription	Brain Anterior Caudate	brain
30	chr6:16837600-16838400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:16837600-16838400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr6:16837600-16838400	Weak transcription	Fetal Muscle Leg	muscle
33	chr6:16837600-16838600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr6:16837600-16838600	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr6:16837600-16838600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:16837600-16838600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr6:16837600-16838600	Enhancers	GM12878-XiMat	blood
38	chr6:16837600-16838800	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr6:16837600-16838800	Enhancers	NHDF-Ad	bronchial
40	chr6:16837600-16839600	Enhancers	Fetal Brain Male	brain
41	chr6:16837600-16839800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr6:16837600-16840600	Weak transcription	Brain Angular Gyrus	brain
43	chr6:16837800-16838200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:16837800-16838400	Weak transcription	Brain Cingulate Gyrus	brain
45	chr6:16837800-16849600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:16838000-16838600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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