Variant report

Variant	rs12528454
Chromosome Location	chr6:5755184-5755185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11969052	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12524563	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17141250	1.00[CEU][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs17141268	0.86[EUR][1000 genomes]
rs17141271	0.86[EUR][1000 genomes]
rs17141289	0.86[EUR][1000 genomes]
rs17145862	0.86[EUR][1000 genomes]
rs2093427	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2326674	1.00[CEU][hapmap]
rs4291133	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs57418738	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59058623	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61187836	0.91[EUR][1000 genomes]
rs6597162	0.84[EUR][1000 genomes]
rs6910357	0.86[EUR][1000 genomes]
rs6914171	0.86[EUR][1000 genomes]
rs6941313	0.86[EUR][1000 genomes]
rs73720206	0.91[EUR][1000 genomes]
rs9504502	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs9504506	1.00[CEU][hapmap];0.94[GIH][hapmap];0.91[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12528454	KDM5B	trans	lymphoblastoid	seeQTL

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5753000-5756200	Weak transcription	NH-A	brain
3	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:5753400-5761000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:5753400-5764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:5753600-5757000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:5753800-5755200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:5754000-5755400	ZNF genes & repeats	Primary T cells from cord blood	blood
9	chr6:5754400-5755200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:5754400-5755200	ZNF genes & repeats	Osteobl	bone
11	chr6:5754600-5756000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:5754600-5757600	Weak transcription	Psoas Muscle	Psoas
13	chr6:5754600-5761000	Weak transcription	Right Ventricle	heart
14	chr6:5754600-5762600	Weak transcription	Aorta	Aorta
15	chr6:5754600-5763200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:5754600-5764800	Weak transcription	Gastric	stomach
17	chr6:5754600-5771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr6:5754800-5756400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:5754800-5757000	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:5754800-5767200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:5754800-5771000	Weak transcription	Pancreas	Pancrea
22	chr6:5755000-5775600	Weak transcription	Thymus	Thymus

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