Variant report

Variant	rs6910357
Chromosome Location	chr6:5782519-5782520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1108303	0.85[ASN][1000 genomes]
rs1125513	0.98[ASN][1000 genomes]
rs11969052	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs12524563	0.82[EUR][1000 genomes]
rs12528454	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12528811	0.90[ASN][1000 genomes]
rs17141250	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17141268	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17141271	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141289	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17141291	0.90[ASN][1000 genomes]
rs17145862	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1815271	0.84[ASN][1000 genomes]
rs2093427	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2326674	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs4291133	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs4959356	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4960134	0.83[ASN][1000 genomes]
rs4960135	0.89[ASN][1000 genomes]
rs4960136	0.89[ASN][1000 genomes]
rs4960137	0.89[ASN][1000 genomes]
rs55864325	0.90[ASN][1000 genomes]
rs55991338	0.90[ASN][1000 genomes]
rs57418738	0.87[EUR][1000 genomes]
rs59058623	0.91[EUR][1000 genomes]
rs60232193	0.90[ASN][1000 genomes]
rs60475061	0.90[ASN][1000 genomes]
rs60532879	0.92[ASN][1000 genomes]
rs60625891	0.86[ASN][1000 genomes]
rs61187836	0.87[EUR][1000 genomes]
rs6597163	0.93[ASN][1000 genomes]
rs6914171	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941313	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821941	0.84[ASN][1000 genomes]
rs73720206	0.87[EUR][1000 genomes]
rs9504502	1.00[CEU][hapmap]
rs9504506	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9504511	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518398	chr6:5777546-5787400	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:5765600-5782800	Weak transcription	Gastric	stomach
3	chr6:5765600-5783000	Weak transcription	Esophagus	oesophagus
4	chr6:5766000-5783400	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:5766000-5783400	Weak transcription	Right Atrium	heart
6	chr6:5770000-5783000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr6:5770200-5782800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:5770200-5783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:5771600-5782600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:5772000-5782600	Weak transcription	Colonic Mucosa	Colon
11	chr6:5772200-5783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:5772400-5782800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr6:5772600-5782800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:5772800-5786800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:5773400-5782600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:5773800-5783000	Weak transcription	Brain Anterior Caudate	brain
17	chr6:5774400-5787400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr6:5775600-5783000	Weak transcription	Ovary	ovary
19	chr6:5776200-5783000	Weak transcription	Pancreas	Pancrea
20	chr6:5776400-5782600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:5776400-5786800	Weak transcription	Thymus	Thymus
22	chr6:5777000-5782800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr6:5777600-5782600	Weak transcription	Fetal Brain Male	brain
24	chr6:5777800-5782600	Weak transcription	Fetal Brain Female	brain
25	chr6:5779200-5787200	Weak transcription	Primary B cells from cord blood	blood
26	chr6:5779400-5782600	Weak transcription	Primary B cells from peripheral blood	blood
27	chr6:5779600-5786600	Weak transcription	Primary T cells from cord blood	blood
28	chr6:5781200-5784400	Enhancers	Fetal Muscle Leg	muscle
29	chr6:5781400-5783400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:5781400-5784200	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:5781600-5783400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr6:5781600-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:5781800-5783000	Weak transcription	Fetal Stomach	stomach
34	chr6:5781800-5783400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr6:5781800-5783800	Enhancers	Left Ventricle	heart
36	chr6:5781800-5786800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:5782000-5783400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:5782000-5784400	Enhancers	Fetal Intestine Large	intestine
39	chr6:5782200-5782600	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr6:5782200-5782600	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr6:5782200-5783200	Enhancers	Spleen	Spleen
42	chr6:5782200-5784200	Enhancers	Fetal Heart	heart
43	chr6:5782200-5788200	Enhancers	Fetal Thymus	thymus
44	chr6:5782400-5782600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr6:5782400-5782600	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr6:5782400-5782600	Enhancers	Duodenum Mucosa	Duodenum
47	chr6:5782400-5782600	Genic enhancers	Fetal Intestine Small	intestine
48	chr6:5782400-5782600	ZNF genes & repeats	Lung	lung
49	chr6:5782400-5782800	Enhancers	Small Intestine	intestine
50	chr6:5782400-5783000	Enhancers	Monocytes-CD14+_RO01746	blood

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