Variant report

Variant	rs1815271
Chromosome Location	chr6:5786114-5786115
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1108303	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1108304	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1125513	0.82[ASN][1000 genomes]
rs12528811	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13437141	0.85[EUR][1000 genomes]
rs17141268	0.81[ASN][1000 genomes]
rs17141289	0.83[ASN][1000 genomes]
rs17141291	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17145862	0.86[ASN][1000 genomes]
rs4959356	0.88[ASN][1000 genomes]
rs4960132	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4960134	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4960135	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4960136	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4960137	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4960138	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55864325	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55991338	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56061157	0.85[EUR][1000 genomes]
rs60232193	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60475061	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60532879	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60625891	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6597163	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6910357	0.84[ASN][1000 genomes]
rs6914171	0.84[ASN][1000 genomes]
rs6917712	0.87[EUR][1000 genomes]
rs6919521	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6941313	0.84[ASN][1000 genomes]
rs72821941	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7766672	0.83[EUR][1000 genomes]
rs9504511	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518398	chr6:5777546-5787400	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv970669	chr6:5783028-5791204	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5772800-5786800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr6:5774400-5787400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:5776400-5786800	Weak transcription	Thymus	Thymus
4	chr6:5779200-5787200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:5779600-5786600	Weak transcription	Primary T cells from cord blood	blood
6	chr6:5781600-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:5781800-5786800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr6:5782200-5788200	Enhancers	Fetal Thymus	thymus
9	chr6:5782600-5787600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:5783600-5786400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr6:5783600-5786800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:5783600-5787400	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:5783800-5786400	Weak transcription	Brain Germinal Matrix	brain
14	chr6:5783800-5787000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:5783800-5787000	Weak transcription	Left Ventricle	heart
16	chr6:5783800-5794600	Weak transcription	Psoas Muscle	Psoas
17	chr6:5784200-5786800	Weak transcription	Fetal Brain Male	brain
18	chr6:5784200-5787600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:5784400-5787000	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:5785600-5786800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:5785600-5786800	Weak transcription	Fetal Muscle Trunk	muscle
22	chr6:5785800-5786600	Weak transcription	Fetal Brain Female	brain
23	chr6:5785800-5786800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr6:5785800-5787400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:5786000-5786400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:5786000-5787200	Enhancers	HMEC	breast
27	chr6:5786000-5787400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:5786000-5787400	Enhancers	NHEK	skin
29	chr6:5786000-5787600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:5786000-5787600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:5786000-5787800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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