Variant report

Variant	rs56061157
Chromosome Location	chr6:5775583-5775584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5771572..5773487-chr6:5775272..5776999,2	K562	blood:
2	chr6:5770963..5772659-chr6:5773968..5776144,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1108303	0.87[EUR][1000 genomes]
rs1108304	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12528811	0.85[EUR][1000 genomes]
rs13437141	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17141291	0.85[EUR][1000 genomes]
rs1815271	0.85[EUR][1000 genomes]
rs4960132	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4960134	0.89[EUR][1000 genomes]
rs4960135	0.85[EUR][1000 genomes]
rs4960136	0.86[EUR][1000 genomes]
rs4960137	0.86[EUR][1000 genomes]
rs4960138	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55864325	0.85[EUR][1000 genomes]
rs55991338	0.85[EUR][1000 genomes]
rs60232193	0.85[EUR][1000 genomes]
rs60475061	0.85[EUR][1000 genomes]
rs60532879	0.88[EUR][1000 genomes]
rs60625891	0.81[EUR][1000 genomes]
rs6597163	0.87[EUR][1000 genomes]
rs6917712	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6919521	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72821941	0.83[EUR][1000 genomes]
rs7760017	0.80[EUR][1000 genomes]
rs7766672	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9504505	0.81[EUR][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:5755000-5775600	Weak transcription	Thymus	Thymus
3	chr6:5764800-5776000	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr6:5765000-5776600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:5765200-5777000	Weak transcription	NHLF	lung
6	chr6:5765200-5778800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr6:5765400-5776000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:5765400-5782200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:5765600-5775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:5765600-5782800	Weak transcription	Gastric	stomach
11	chr6:5765600-5783000	Weak transcription	Esophagus	oesophagus
12	chr6:5766000-5776200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:5766000-5777200	Weak transcription	Lung	lung
14	chr6:5766000-5783400	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:5766000-5783400	Weak transcription	Right Atrium	heart
16	chr6:5766600-5775600	Weak transcription	Fetal Thymus	thymus
17	chr6:5767000-5776000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:5767000-5782200	Weak transcription	Fetal Heart	heart
19	chr6:5767800-5781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:5768200-5782400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr6:5768400-5776200	Weak transcription	Liver	Liver
22	chr6:5769400-5781400	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:5770000-5778000	Weak transcription	GM12878-XiMat	blood
24	chr6:5770000-5783000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr6:5770200-5776200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:5770200-5782800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:5770200-5783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:5770400-5776800	Strong transcription	Fetal Intestine Small	intestine
29	chr6:5770400-5782400	Weak transcription	Right Ventricle	heart
30	chr6:5770600-5782200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:5770800-5782000	Weak transcription	Fetal Intestine Large	intestine
32	chr6:5771000-5776400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:5771000-5777400	Strong transcription	Fetal Stomach	stomach
34	chr6:5771000-5779600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:5771200-5776800	Strong transcription	Primary T cells from cord blood	blood
36	chr6:5771400-5776000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:5771400-5781000	Weak transcription	Adipose Nuclei	Adipose
38	chr6:5771600-5775600	Strong transcription	Ovary	ovary
39	chr6:5771600-5782400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:5771600-5782600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr6:5771800-5776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr6:5772000-5782600	Weak transcription	Colonic Mucosa	Colon
43	chr6:5772200-5783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr6:5772400-5782800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:5772600-5776800	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:5772600-5781800	Weak transcription	Left Ventricle	heart
47	chr6:5772600-5782800	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:5772800-5786800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr6:5773400-5775600	Weak transcription	Pancreas	Pancrea
50	chr6:5773400-5776400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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