Variant report

Variant	rs7766672
Chromosome Location	chr6:5773821-5773822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1108303	0.85[EUR][1000 genomes]
rs1108304	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11969052	0.81[CHB][hapmap]
rs12528811	0.83[EUR][1000 genomes]
rs13437141	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17141291	0.83[EUR][1000 genomes]
rs1815271	0.83[EUR][1000 genomes]
rs2326673	0.91[GIH][hapmap];0.88[TSI][hapmap]
rs4291133	0.95[JPT][hapmap]
rs4960132	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4960134	0.87[EUR][1000 genomes]
rs4960135	0.83[EUR][1000 genomes]
rs4960136	0.84[EUR][1000 genomes]
rs4960137	0.84[EUR][1000 genomes]
rs4960138	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55864325	0.83[EUR][1000 genomes]
rs55991338	0.83[EUR][1000 genomes]
rs56061157	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60232193	0.83[EUR][1000 genomes]
rs60475061	0.83[EUR][1000 genomes]
rs60532879	0.86[EUR][1000 genomes]
rs6597163	0.85[EUR][1000 genomes]
rs6917712	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6919521	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72821941	0.81[EUR][1000 genomes]
rs7748744	0.81[TSI][hapmap]
rs7760017	0.81[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.92[TSI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9328330	0.83[AMR][1000 genomes]
rs9502335	0.85[CHB][hapmap];0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9504503	0.83[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes]
rs9504505	0.85[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969347	chr6:5757580-5774327	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:5755000-5775600	Weak transcription	Thymus	Thymus
3	chr6:5764600-5774200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:5764800-5776000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr6:5765000-5776600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:5765200-5777000	Weak transcription	NHLF	lung
7	chr6:5765200-5778800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:5765400-5776000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:5765400-5782200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:5765600-5774000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr6:5765600-5775800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:5765600-5782800	Weak transcription	Gastric	stomach
13	chr6:5765600-5783000	Weak transcription	Esophagus	oesophagus
14	chr6:5765800-5775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:5766000-5776200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:5766000-5777200	Weak transcription	Lung	lung
17	chr6:5766000-5783400	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:5766000-5783400	Weak transcription	Right Atrium	heart
19	chr6:5766600-5775600	Weak transcription	Fetal Thymus	thymus
20	chr6:5767000-5776000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr6:5767000-5782200	Weak transcription	Fetal Heart	heart
22	chr6:5767800-5781600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:5768200-5782400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:5768400-5776200	Weak transcription	Liver	Liver
25	chr6:5769400-5781400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr6:5770000-5778000	Weak transcription	GM12878-XiMat	blood
27	chr6:5770000-5783000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr6:5770200-5776200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr6:5770200-5782800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr6:5770200-5783000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr6:5770400-5776800	Strong transcription	Fetal Intestine Small	intestine
32	chr6:5770400-5782400	Weak transcription	Right Ventricle	heart
33	chr6:5770600-5782200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:5770800-5782000	Weak transcription	Fetal Intestine Large	intestine
35	chr6:5771000-5776400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:5771000-5777400	Strong transcription	Fetal Stomach	stomach
37	chr6:5771000-5779600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr6:5771200-5776800	Strong transcription	Primary T cells from cord blood	blood
39	chr6:5771400-5775000	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr6:5771400-5776000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:5771400-5781000	Weak transcription	Adipose Nuclei	Adipose
42	chr6:5771600-5775600	Strong transcription	Ovary	ovary
43	chr6:5771600-5782400	Weak transcription	Monocytes-CD14+_RO01746	blood
44	chr6:5771600-5782600	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr6:5771800-5775400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr6:5771800-5776000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:5772000-5782600	Weak transcription	Colonic Mucosa	Colon
48	chr6:5772200-5783200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:5772400-5782800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr6:5772600-5775200	Weak transcription	Spleen	Spleen

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