Variant report

Variant	rs9502335
Chromosome Location	chr6:5746379-5746380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5739661..5741757-chr6:5743900..5746421,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11969052	0.94[CHB][hapmap]
rs2326673	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs6901527	0.85[CEU][hapmap]
rs6935929	0.92[EUR][1000 genomes]
rs7740019	0.85[CEU][hapmap]
rs7748744	0.85[CEU][hapmap]
rs7760017	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7766672	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9328330	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9504502	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs9504503	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9504505	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
5	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
6	chr6:5736600-5751200	Weak transcription	Ovary	ovary
7	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
8	chr6:5737400-5750200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:5741800-5754000	Weak transcription	Aorta	Aorta
10	chr6:5742000-5751600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:5743000-5754000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:5743600-5746600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:5743600-5751600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:5743600-5752000	Weak transcription	Fetal Thymus	thymus
15	chr6:5744000-5746400	Weak transcription	Brain Substantia Nigra	brain
16	chr6:5744000-5751800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:5744000-5752200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:5744000-5753600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:5744200-5750800	Enhancers	Fetal Muscle Trunk	muscle
20	chr6:5744200-5752000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr6:5744600-5747600	Weak transcription	Right Atrium	heart
22	chr6:5744600-5751800	Weak transcription	Lung	lung
23	chr6:5744800-5748000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:5745000-5746400	Weak transcription	Right Ventricle	heart
25	chr6:5745400-5748000	Enhancers	Fetal Brain Female	brain
26	chr6:5745600-5746400	Weak transcription	Left Ventricle	heart
27	chr6:5745600-5746600	Weak transcription	Fetal Heart	heart
28	chr6:5745600-5749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:5745800-5748600	Enhancers	Fetal Brain Male	brain
30	chr6:5745800-5750400	Weak transcription	Gastric	stomach
31	chr6:5746000-5746600	Enhancers	Psoas Muscle	Psoas
32	chr6:5746200-5747800	Enhancers	Skeletal Muscle Male	skeletal muscle

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