Variant report

Variant	rs6901527
Chromosome Location	chr6:5763194-5763195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5742971..5744630-chr6:5761560..5764048,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1206673	0.91[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1206675	1.00[ASN][1000 genomes]
rs17133302	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17141229	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs17145857	1.00[ASN][1000 genomes]
rs1815272	1.00[ASN][1000 genomes]
rs2326673	0.85[CEU][hapmap]
rs59815503	0.88[EUR][1000 genomes]
rs6911736	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6920448	0.93[EUR][1000 genomes]
rs6931033	0.95[EUR][1000 genomes]
rs72821914	0.87[EUR][1000 genomes]
rs753100	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7740019	1.00[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs7747725	0.93[EUR][1000 genomes]
rs7748744	1.00[CEU][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs7760017	0.85[CEU][hapmap]
rs942114	0.94[EUR][1000 genomes]
rs9502335	0.85[CEU][hapmap]
rs9504503	0.85[CEU][hapmap]
rs9504505	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969347	chr6:5757580-5774327	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:5753400-5764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:5754600-5763200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:5754600-5764800	Weak transcription	Gastric	stomach
5	chr6:5754600-5771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:5754800-5767200	Weak transcription	Fetal Intestine Small	intestine
7	chr6:5754800-5771000	Weak transcription	Pancreas	Pancrea
8	chr6:5755000-5775600	Weak transcription	Thymus	Thymus
9	chr6:5756400-5763400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:5756400-5771200	Weak transcription	Primary T cells from cord blood	blood
11	chr6:5758000-5764200	Weak transcription	Psoas Muscle	Psoas
12	chr6:5758400-5764600	Weak transcription	Lung	lung
13	chr6:5760000-5766600	Enhancers	Fetal Muscle Leg	muscle
14	chr6:5760400-5771400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr6:5761000-5764200	Weak transcription	Primary B cells from cord blood	blood
16	chr6:5761200-5764200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:5761200-5764600	Weak transcription	Fetal Stomach	stomach
18	chr6:5761400-5764600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:5761600-5764200	Enhancers	Fetal Heart	heart
20	chr6:5761600-5764800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:5761800-5766000	Enhancers	Fetal Brain Male	brain
22	chr6:5762000-5764200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr6:5762200-5764400	Enhancers	Fetal Brain Female	brain
24	chr6:5762400-5764000	Weak transcription	Brain Anterior Caudate	brain
25	chr6:5762400-5764400	Enhancers	Stomach Smooth Muscle	stomach
26	chr6:5762600-5763400	Enhancers	Aorta	Aorta
27	chr6:5762600-5763800	Weak transcription	Osteobl	bone
28	chr6:5762600-5765200	Enhancers	Fetal Muscle Trunk	muscle
29	chr6:5762800-5763200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:5762800-5764000	Weak transcription	Brain Angular Gyrus	brain
31	chr6:5762800-5764200	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr6:5763000-5763600	Enhancers	Right Atrium	heart
33	chr6:5763000-5763600	Enhancers	Right Ventricle	heart
34	chr6:5763000-5764600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:5763000-5764600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:5763000-5765400	Enhancers	NHDF-Ad	bronchial
37	chr6:5763000-5766000	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links