Variant report

Variant	rs7747725
Chromosome Location	chr6:5761789-5761790
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5742971..5744630-chr6:5761560..5764048,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1206673	0.87[EUR][1000 genomes]
rs17141229	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3812176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59815503	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901527	0.93[EUR][1000 genomes]
rs6911736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920448	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931033	1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs753100	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740019	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748744	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942114	0.87[EUR][1000 genomes]
rs9502336	0.83[ASN][1000 genomes]
rs9504515	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969347	chr6:5757580-5774327	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:5753400-5764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:5754600-5762600	Weak transcription	Aorta	Aorta
5	chr6:5754600-5763200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr6:5754600-5764800	Weak transcription	Gastric	stomach
7	chr6:5754600-5771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:5754800-5767200	Weak transcription	Fetal Intestine Small	intestine
9	chr6:5754800-5771000	Weak transcription	Pancreas	Pancrea
10	chr6:5755000-5775600	Weak transcription	Thymus	Thymus
11	chr6:5756400-5763400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:5756400-5771200	Weak transcription	Primary T cells from cord blood	blood
13	chr6:5758000-5764200	Weak transcription	Psoas Muscle	Psoas
14	chr6:5758400-5764600	Weak transcription	Lung	lung
15	chr6:5760000-5766600	Enhancers	Fetal Muscle Leg	muscle
16	chr6:5760400-5771400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr6:5761000-5761800	Enhancers	Left Ventricle	heart
18	chr6:5761000-5761800	Enhancers	Right Atrium	heart
19	chr6:5761000-5761800	Enhancers	Right Ventricle	heart
20	chr6:5761000-5764200	Weak transcription	Primary B cells from cord blood	blood
21	chr6:5761200-5764200	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr6:5761200-5764600	Weak transcription	Fetal Stomach	stomach
23	chr6:5761400-5761800	Weak transcription	Fetal Brain Male	brain
24	chr6:5761400-5762200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:5761400-5762600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr6:5761400-5762600	Enhancers	Osteobl	bone
27	chr6:5761400-5764600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:5761600-5761800	Enhancers	Brain Substantia Nigra	brain
29	chr6:5761600-5762400	Enhancers	Brain Anterior Caudate	brain
30	chr6:5761600-5762400	Enhancers	Fetal Kidney	kidney
31	chr6:5761600-5764200	Enhancers	Fetal Heart	heart
32	chr6:5761600-5764800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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