Variant report

Variant	rs6931033
Chromosome Location	chr6:5760244-5760245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1206673	0.87[EUR][1000 genomes]
rs17141229	1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3812176	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs59815503	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901527	0.95[EUR][1000 genomes]
rs6911736	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920448	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821914	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs753100	1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7740019	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747725	1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748744	1.00[CHB][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs942114	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9502336	0.83[ASN][1000 genomes]
rs9504515	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv969347	chr6:5757580-5774327	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:5753400-5761000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:5753400-5764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:5754600-5761000	Weak transcription	Right Ventricle	heart
6	chr6:5754600-5762600	Weak transcription	Aorta	Aorta
7	chr6:5754600-5763200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:5754600-5764800	Weak transcription	Gastric	stomach
9	chr6:5754600-5771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:5754800-5767200	Weak transcription	Fetal Intestine Small	intestine
11	chr6:5754800-5771000	Weak transcription	Pancreas	Pancrea
12	chr6:5755000-5775600	Weak transcription	Thymus	Thymus
13	chr6:5755200-5761400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:5755200-5761400	Weak transcription	Osteobl	bone
15	chr6:5756400-5763400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:5756400-5771200	Weak transcription	Primary T cells from cord blood	blood
17	chr6:5756600-5760400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:5758000-5761200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:5758000-5764200	Weak transcription	Psoas Muscle	Psoas
20	chr6:5758400-5764600	Weak transcription	Lung	lung
21	chr6:5760000-5766600	Enhancers	Fetal Muscle Leg	muscle
22	chr6:5760200-5760800	Weak transcription	Primary B cells from cord blood	blood

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