Variant report

Variant	rs7740019
Chromosome Location	chr6:5744992-5744993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5738658..5741672-chr6:5743652..5746350,4	K562	blood:
2	chr6:5739661..5741757-chr6:5743900..5746421,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1206673	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs17141229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326673	0.85[CEU][hapmap]
rs3812176	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59815503	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901527	1.00[CEU][hapmap];0.91[TSI][hapmap];0.91[EUR][1000 genomes]
rs6911736	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920448	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931033	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821914	0.90[EUR][1000 genomes]
rs753100	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747725	1.00[JPT][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748744	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7760017	0.85[CEU][hapmap]
rs942114	0.85[EUR][1000 genomes]
rs9502335	0.85[CEU][hapmap]
rs9502336	0.83[ASN][1000 genomes]
rs9504503	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs9504505	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs9504515	0.90[ASN][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
5	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
6	chr6:5736600-5751200	Weak transcription	Ovary	ovary
7	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
8	chr6:5737400-5750200	Weak transcription	Primary T cells from cord blood	blood
9	chr6:5741800-5754000	Weak transcription	Aorta	Aorta
10	chr6:5742000-5751600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:5743000-5754000	Enhancers	Fetal Muscle Leg	muscle
12	chr6:5743600-5746600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:5743600-5751600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:5743600-5752000	Weak transcription	Fetal Thymus	thymus
15	chr6:5744000-5746400	Weak transcription	Brain Substantia Nigra	brain
16	chr6:5744000-5751800	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:5744000-5752200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr6:5744000-5753600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:5744200-5745000	Enhancers	Right Ventricle	heart
20	chr6:5744200-5745600	Enhancers	Left Ventricle	heart
21	chr6:5744200-5750800	Enhancers	Fetal Muscle Trunk	muscle
22	chr6:5744200-5752000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr6:5744400-5745600	Enhancers	Fetal Heart	heart
24	chr6:5744600-5747600	Weak transcription	Right Atrium	heart
25	chr6:5744600-5751800	Weak transcription	Lung	lung
26	chr6:5744800-5745000	Enhancers	Esophagus	oesophagus
27	chr6:5744800-5745000	Enhancers	Psoas Muscle	Psoas
28	chr6:5744800-5748000	Enhancers	Skeletal Muscle Female	skeletal muscle

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