Variant report

Variant	rs753100
Chromosome Location	chr6:5752824-5752825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1206673	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs17141229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326673	0.85[CEU][hapmap]
rs3812176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs59815503	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6901527	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs6911736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6920448	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931033	1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72821914	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7740019	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7760017	0.85[CEU][hapmap]
rs942114	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9502336	0.83[ASN][1000 genomes]
rs9504503	0.85[CEU][hapmap]
rs9504505	0.85[CEU][hapmap]
rs9504515	0.90[ASN][1000 genomes]

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
3	chr6:5741800-5754000	Weak transcription	Aorta	Aorta
4	chr6:5743000-5754000	Enhancers	Fetal Muscle Leg	muscle
5	chr6:5744000-5753600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:5748800-5754400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:5749200-5753600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:5750200-5753600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:5750200-5754000	Strong transcription	Primary T cells from cord blood	blood
10	chr6:5750400-5754400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:5750800-5753800	Weak transcription	Gastric	stomach
12	chr6:5751200-5753800	Enhancers	Fetal Heart	heart
13	chr6:5751400-5753000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:5751400-5753000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:5751400-5753400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:5751600-5753000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:5751600-5753000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:5751600-5753000	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr6:5751600-5753000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr6:5751800-5753000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr6:5751800-5753000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr6:5751800-5753000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:5751800-5753000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:5751800-5753000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr6:5751800-5753000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr6:5751800-5753000	Enhancers	Brain Germinal Matrix	brain
27	chr6:5751800-5753200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr6:5751800-5753200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:5751800-5753200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:5751800-5753200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr6:5751800-5753200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:5751800-5753200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr6:5751800-5753200	Enhancers	Fetal Muscle Trunk	muscle
34	chr6:5751800-5753200	Enhancers	Right Atrium	heart
35	chr6:5751800-5753400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:5751800-5753400	Enhancers	Brain Anterior Caudate	brain
37	chr6:5751800-5753400	Enhancers	Psoas Muscle	Psoas
38	chr6:5751800-5753800	Enhancers	Left Ventricle	heart
39	chr6:5752000-5753000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr6:5752000-5753000	Enhancers	Osteobl	bone
41	chr6:5752000-5753200	Enhancers	Fetal Thymus	thymus
42	chr6:5752000-5753400	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr6:5752000-5753400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr6:5752000-5753400	Enhancers	iPS-15b Cell Line	embryonic stem cell
45	chr6:5752000-5753600	Enhancers	Fetal Brain Male	brain
46	chr6:5752000-5754400	Weak transcription	Right Ventricle	heart
47	chr6:5752200-5753000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr6:5752200-5753000	Enhancers	Brain Hippocampus Middle	brain
49	chr6:5752200-5753000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:5752200-5753000	Flanking Active TSS	HSMMtube	muscle

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