Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5739661..5741757-chr6:5743900..5746421,2	K562	blood:

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17141229	0.85[CEU][hapmap]
rs2326673	1.00[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs6901527	0.85[CEU][hapmap]
rs6911736	0.85[CEU][hapmap]
rs6935929	0.90[EUR][1000 genomes]
rs753100	0.85[CEU][hapmap]
rs7740019	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs7748744	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs7760017	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7766672	0.82[AMR][1000 genomes]
rs9328330	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9502335	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9504502	0.89[CHB][hapmap];0.95[CHD][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs9504505	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.84[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5723000-5744200	Weak transcription	Right Ventricle	heart
2	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
4	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:5729600-5744800	Weak transcription	Esophagus	oesophagus
6	chr6:5729800-5744200	Weak transcription	Left Ventricle	heart
7	chr6:5730000-5743000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:5730800-5746600	Weak transcription	Fetal Stomach	stomach
9	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
10	chr6:5734800-5744400	Weak transcription	Right Atrium	heart
11	chr6:5736400-5743600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr6:5736600-5743800	Weak transcription	Lung	lung
13	chr6:5736600-5751200	Weak transcription	Ovary	ovary
14	chr6:5736800-5743000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:5736800-5743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
17	chr6:5737400-5750200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:5738600-5743600	Weak transcription	Fetal Lung	lung
19	chr6:5740200-5741800	Enhancers	HepG2	liver
20	chr6:5741000-5742000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:5741200-5743200	Weak transcription	Thymus	Thymus
22	chr6:5741600-5741800	ZNF genes & repeats	Aorta	Aorta

Quick Search: