Variant report

Variant	rs17141229
Chromosome Location	chr6:5748088-5748089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5747398..5750144-chr6:5756400..5758894,2	K562	blood:
2	chr6:5742876..5744979-chr6:5748084..5750593,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1206673	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs2326673	0.85[CEU][hapmap]
rs3812176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs59815503	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6901527	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6911736	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6920448	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6931033	1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72821914	0.94[EUR][1000 genomes]
rs753100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7740019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7747725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7748744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760017	0.85[CEU][hapmap]
rs942114	0.89[EUR][1000 genomes]
rs9502336	0.86[ASN][1000 genomes]
rs9504503	0.85[CEU][hapmap]
rs9504505	0.85[CEU][hapmap]
rs9504515	0.93[ASN][1000 genomes]
rs9504516	0.81[ASN][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5725200-5749200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:5726000-5749400	Weak transcription	Fetal Intestine Small	intestine
3	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:5732600-5749200	Weak transcription	Spleen	Spleen
5	chr6:5736600-5751200	Weak transcription	Ovary	ovary
6	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
7	chr6:5737400-5750200	Weak transcription	Primary T cells from cord blood	blood
8	chr6:5741800-5754000	Weak transcription	Aorta	Aorta
9	chr6:5742000-5751600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr6:5743000-5754000	Enhancers	Fetal Muscle Leg	muscle
11	chr6:5743600-5751600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr6:5743600-5752000	Weak transcription	Fetal Thymus	thymus
13	chr6:5744000-5751800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:5744000-5752200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr6:5744000-5753600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:5744200-5750800	Enhancers	Fetal Muscle Trunk	muscle
17	chr6:5744200-5752000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:5744600-5751800	Weak transcription	Lung	lung
19	chr6:5745600-5749800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:5745800-5748600	Enhancers	Fetal Brain Male	brain
21	chr6:5745800-5750400	Weak transcription	Gastric	stomach
22	chr6:5746400-5748200	Enhancers	Right Ventricle	heart
23	chr6:5746600-5749400	Weak transcription	Psoas Muscle	Psoas
24	chr6:5746600-5752200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:5746800-5748600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:5747200-5751800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:5747200-5752000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr6:5747400-5751800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr6:5747400-5752000	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:5747600-5749200	Weak transcription	Left Ventricle	heart
31	chr6:5747600-5750200	Enhancers	Right Atrium	heart
32	chr6:5747600-5751800	Weak transcription	Brain Germinal Matrix	brain
33	chr6:5747800-5751400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr6:5747800-5751800	Weak transcription	NHDF-Ad	bronchial
35	chr6:5748000-5749200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr6:5748000-5749400	Weak transcription	Fetal Heart	heart
37	chr6:5748000-5751600	Weak transcription	Fetal Brain Female	brain

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