Variant report

Variant	rs7760017
Chromosome Location	chr6:5753906-5753907
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13437141	0.80[EUR][1000 genomes]
rs17141229	0.85[CEU][hapmap]
rs2326673	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[MEX][hapmap];0.96[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56061157	0.80[EUR][1000 genomes]
rs6901527	0.85[CEU][hapmap]
rs6911736	0.85[CEU][hapmap]
rs6935929	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs753100	0.85[CEU][hapmap]
rs7740019	0.85[CEU][hapmap]
rs7748744	0.85[CEU][hapmap];0.89[TSI][hapmap]
rs7766672	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9328330	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9502335	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9504502	0.92[CHD][hapmap];0.95[JPT][hapmap]
rs9504503	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[CHD][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.96[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9504505	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[JPT][hapmap];0.96[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
3	chr6:5741800-5754000	Weak transcription	Aorta	Aorta
4	chr6:5743000-5754000	Enhancers	Fetal Muscle Leg	muscle
5	chr6:5748800-5754400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:5750200-5754000	Strong transcription	Primary T cells from cord blood	blood
7	chr6:5750400-5754400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:5752000-5754400	Weak transcription	Right Ventricle	heart
9	chr6:5753000-5754200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:5753000-5754400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:5753000-5754400	Weak transcription	Osteobl	bone
12	chr6:5753000-5754600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:5753000-5756200	Weak transcription	NH-A	brain
14	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:5753200-5754400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:5753200-5754400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:5753200-5754400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr6:5753200-5754400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:5753400-5754000	Weak transcription	Psoas Muscle	Psoas
20	chr6:5753400-5754400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:5753400-5761000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:5753400-5764200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:5753600-5754000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:5753600-5757000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:5753800-5754200	ZNF genes & repeats	Gastric	stomach
26	chr6:5753800-5754600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:5753800-5754800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:5753800-5755200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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