Variant report

Variant	rs17141291
Chromosome Location	chr6:5783258-5783259
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1108303	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1108304	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1125513	0.88[ASN][1000 genomes]
rs11969052	0.85[JPT][hapmap]
rs12528811	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13437141	0.85[EUR][1000 genomes]
rs17141268	0.87[ASN][1000 genomes]
rs17141289	0.89[ASN][1000 genomes]
rs17145862	0.96[ASN][1000 genomes]
rs1815271	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2093427	0.88[JPT][hapmap]
rs4959356	0.90[ASN][1000 genomes]
rs4960132	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4960134	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4960135	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4960136	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4960137	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4960138	0.94[EUR][1000 genomes]
rs55864325	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55991338	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56061157	0.85[EUR][1000 genomes]
rs60232193	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60475061	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60532879	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60625891	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6597163	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910357	0.90[ASN][1000 genomes]
rs6914171	0.90[ASN][1000 genomes]
rs6917712	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6919521	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6941313	0.90[ASN][1000 genomes]
rs72821941	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7766672	0.83[EUR][1000 genomes]
rs9504511	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518398	chr6:5777546-5787400	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv970669	chr6:5783028-5791204	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5753000-5786000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:5766000-5783400	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:5766000-5783400	Weak transcription	Right Atrium	heart
4	chr6:5772800-5786800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:5774400-5787400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr6:5776400-5786800	Weak transcription	Thymus	Thymus
7	chr6:5779200-5787200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:5779600-5786600	Weak transcription	Primary T cells from cord blood	blood
9	chr6:5781200-5784400	Enhancers	Fetal Muscle Leg	muscle
10	chr6:5781400-5783400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:5781400-5784200	Enhancers	Fetal Muscle Trunk	muscle
12	chr6:5781600-5783400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:5781600-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:5781800-5783400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:5781800-5783800	Enhancers	Left Ventricle	heart
16	chr6:5781800-5786800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:5782000-5783400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:5782000-5784400	Enhancers	Fetal Intestine Large	intestine
19	chr6:5782200-5784200	Enhancers	Fetal Heart	heart
20	chr6:5782200-5788200	Enhancers	Fetal Thymus	thymus
21	chr6:5782400-5783600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr6:5782400-5783800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr6:5782400-5783800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:5782400-5784000	Enhancers	Stomach Mucosa	stomach
25	chr6:5782400-5784200	Enhancers	Right Ventricle	heart
26	chr6:5782400-5785000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr6:5782600-5783400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr6:5782600-5783400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:5782600-5783600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:5782600-5783800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr6:5782600-5784000	Enhancers	Fetal Brain Female	brain
32	chr6:5782600-5784200	Enhancers	Colonic Mucosa	Colon
33	chr6:5782600-5784200	Enhancers	Fetal Brain Male	brain
34	chr6:5782600-5784200	Enhancers	Fetal Intestine Small	intestine
35	chr6:5782600-5787600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:5782800-5783400	Enhancers	Gastric	stomach
37	chr6:5782800-5783800	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr6:5782800-5783800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr6:5782800-5783800	Enhancers	Brain Germinal Matrix	brain
40	chr6:5782800-5783800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr6:5782800-5783800	Enhancers	HSMMtube	muscle
42	chr6:5782800-5784200	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr6:5782800-5784200	Weak transcription	Small Intestine	intestine
44	chr6:5782800-5784400	Enhancers	Placenta	Placenta
45	chr6:5782800-5784800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr6:5783000-5783400	Enhancers	Esophagus	oesophagus
47	chr6:5783000-5783400	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:5783000-5783400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr6:5783000-5783400	Flanking Active TSS	Stomach Smooth Muscle	stomach
50	chr6:5783000-5783600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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