Variant report

Variant	rs55991338
Chromosome Location	chr6:5787774-5787775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1108303	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1108304	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1125513	0.89[ASN][1000 genomes]
rs12528811	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13437141	0.85[EUR][1000 genomes]
rs17141268	0.87[ASN][1000 genomes]
rs17141289	0.89[ASN][1000 genomes]
rs17141291	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17145862	0.93[ASN][1000 genomes]
rs1815271	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4959356	0.99[ASN][1000 genomes]
rs4960132	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4960134	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4960135	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4960136	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4960137	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4960138	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55864325	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56061157	0.85[EUR][1000 genomes]
rs60232193	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60475061	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60532879	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60625891	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6597163	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6910357	0.90[ASN][1000 genomes]
rs6914171	0.90[ASN][1000 genomes]
rs6917712	0.87[EUR][1000 genomes]
rs6919521	0.88[EUR][1000 genomes]
rs6941313	0.90[ASN][1000 genomes]
rs72821941	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7766672	0.83[EUR][1000 genomes]
rs9504511	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv970669	chr6:5783028-5791204	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv981101	chr6:5787642-5788880	Enhancers Weak transcription Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5781600-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:5782200-5788200	Enhancers	Fetal Thymus	thymus
3	chr6:5783800-5794600	Weak transcription	Psoas Muscle	Psoas
4	chr6:5786000-5787800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:5786400-5787800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:5786600-5787800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr6:5786600-5788000	Enhancers	Primary T cells from cord blood	blood
8	chr6:5786800-5787800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:5786800-5787800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:5786800-5788000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:5786800-5788000	Enhancers	Dnd41	blood
12	chr6:5787000-5787800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:5787000-5787800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:5787000-5787800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:5787000-5787800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr6:5787000-5788000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:5787000-5788000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:5787000-5788000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr6:5787000-5789200	Enhancers	Fetal Muscle Leg	muscle
20	chr6:5787200-5788000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:5787200-5788000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:5787400-5787800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr6:5787400-5788000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr6:5787400-5793000	Weak transcription	Fetal Brain Female	brain
25	chr6:5787600-5787800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:5787600-5787800	Enhancers	Cortex derived primary cultured neurospheres	brain

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