Variant report

Variant	rs61187836
Chromosome Location	chr6:5750518-5750519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:5742876..5744979-chr6:5748084..5750593,2	K562	blood:
2	chr6:5739286..5741528-chr6:5748707..5751245,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11969052	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12524563	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12528454	0.91[EUR][1000 genomes]
rs17141250	0.82[EUR][1000 genomes]
rs17141268	0.87[EUR][1000 genomes]
rs17141271	0.87[EUR][1000 genomes]
rs17141289	0.87[EUR][1000 genomes]
rs17145862	0.87[EUR][1000 genomes]
rs2093427	0.87[EUR][1000 genomes]
rs4291133	0.82[EUR][1000 genomes]
rs57418738	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59058623	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6597162	0.84[EUR][1000 genomes]
rs6910357	0.87[EUR][1000 genomes]
rs6914171	0.87[EUR][1000 genomes]
rs6941313	0.87[EUR][1000 genomes]
rs73720206	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9504502	0.80[EUR][1000 genomes]
rs9504506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5727000-5762400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr6:5736600-5751200	Weak transcription	Ovary	ovary
3	chr6:5736800-5754400	Weak transcription	Pancreas	Pancrea
4	chr6:5741800-5754000	Weak transcription	Aorta	Aorta
5	chr6:5742000-5751600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:5743000-5754000	Enhancers	Fetal Muscle Leg	muscle
7	chr6:5743600-5751600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:5743600-5752000	Weak transcription	Fetal Thymus	thymus
9	chr6:5744000-5751800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr6:5744000-5752200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:5744000-5753600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:5744200-5750800	Enhancers	Fetal Muscle Trunk	muscle
13	chr6:5744200-5752000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:5744600-5751800	Weak transcription	Lung	lung
15	chr6:5746600-5752200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:5747200-5751800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:5747200-5752000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:5747400-5751800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr6:5747400-5752000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr6:5747600-5751800	Weak transcription	Brain Germinal Matrix	brain
21	chr6:5747800-5751400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:5747800-5751800	Weak transcription	NHDF-Ad	bronchial
23	chr6:5748000-5751600	Weak transcription	Fetal Brain Female	brain
24	chr6:5748600-5752000	Weak transcription	Fetal Brain Male	brain
25	chr6:5748800-5754400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:5749200-5750600	Enhancers	Left Ventricle	heart
27	chr6:5749200-5753600	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:5749600-5751400	Weak transcription	HSMMtube	muscle
29	chr6:5749800-5751400	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:5749800-5751800	Weak transcription	Psoas Muscle	Psoas
31	chr6:5750200-5751200	Weak transcription	Fetal Heart	heart
32	chr6:5750200-5751800	Weak transcription	Right Atrium	heart
33	chr6:5750200-5753600	Weak transcription	Fetal Intestine Small	intestine
34	chr6:5750200-5754000	Strong transcription	Primary T cells from cord blood	blood
35	chr6:5750400-5750800	ZNF genes & repeats	Gastric	stomach
36	chr6:5750400-5751600	Weak transcription	Right Ventricle	heart
37	chr6:5750400-5751800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr6:5750400-5754400	Weak transcription	Rectal Mucosa Donor 31	rectum

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