Variant report

Variant	rs12531545
Chromosome Location	chr7:137892973-137892974
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137891304..137893793-chr7:138144559..138146749,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122779	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1074096	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12536908	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs12538071	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12538075	0.92[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12540428	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1602106	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2087468	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4142643	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs56250738	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57484232	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs57501836	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs60045404	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60139929	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61272163	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6467747	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6953434	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs6967735	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73452738	0.92[AMR][1000 genomes]
rs73452748	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73452751	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73452757	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73456792	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73458710	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73458718	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7777620	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7787920	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7806331	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137880400-137893800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:137888600-137893200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:137890200-137893200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr7:137891000-137893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:137891000-137893600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:137891000-137894200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:137891600-137894000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:137892000-137893400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:137892000-137893800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:137892000-137894400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:137892000-137894400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr7:137892000-137895400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:137892400-137893600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr7:137892400-137894400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:137892400-137894400	Enhancers	Liver	Liver
17	chr7:137892600-137893000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr7:137892600-137894200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:137892600-137894200	Enhancers	H9 Cell Line	embryonic stem cell
20	chr7:137892800-137893000	Enhancers	HUES48 Cell Line	embryonic stem cell

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