Variant report

Variant	rs6953434
Chromosome Location	chr7:137878774-137878775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137870483..137872900-chr7:137877532..137880504,2	K562	blood:
2	chr7:137875217..137877767-chr7:137878416..137880126,2	K562	blood:
3	chr7:137878463..137879263-chr7:137929966..137930618,2	MCF-7	breast:
4	chr7:137878389..137879265-chr7:137929966..137930816,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201465	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1074096	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12531545	1.00[CEU][hapmap];1.00[MEX][hapmap];0.84[AMR][1000 genomes]
rs12535510	0.94[EUR][1000 genomes]
rs12536908	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12540428	0.84[AMR][1000 genomes]
rs1602106	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2087468	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3890048	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4142643	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56250738	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57484232	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57501836	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs60045404	0.84[AMR][1000 genomes]
rs60139929	0.84[AMR][1000 genomes]
rs61272163	0.83[EUR][1000 genomes]
rs6467747	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6957124	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6964804	0.94[EUR][1000 genomes]
rs6967735	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73452705	0.88[EUR][1000 genomes]
rs73452738	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73452748	0.84[AMR][1000 genomes]
rs73452751	0.82[AMR][1000 genomes]
rs73456792	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73458710	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73458718	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7777620	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7787920	0.84[AMR][1000 genomes]
rs7803515	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7806331	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137873600-137880200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:137873600-137893800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:137878000-137881600	Enhancers	Lung	lung
4	chr7:137878200-137880600	Enhancers	HepG2	liver
5	chr7:137878600-137878800	Enhancers	Stomach Mucosa	stomach
6	chr7:137878600-137879600	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr7:137878600-137884000	Enhancers	Primary monocytes fromperipheralblood	blood

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