Variant report

Variant	rs7777620
Chromosome Location	chr7:137901559-137901560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:137898688..137901655-chr7:137914891..137916858,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1074096	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12531545	0.90[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12535510	0.84[EUR][1000 genomes]
rs12536908	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12538071	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12538075	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12540428	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1602106	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2087468	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3890048	0.84[EUR][1000 genomes]
rs4142643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56250738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57484232	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57501836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60045404	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs60139929	0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61272163	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6467747	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6953434	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6957124	0.84[EUR][1000 genomes]
rs6964804	0.84[EUR][1000 genomes]
rs6967735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73452738	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73452748	0.90[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73452751	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs73452757	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73456792	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73458710	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73458718	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7787920	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7803515	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7806331	0.93[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137893800-137905200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:137894200-137902400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:137894600-137902200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:137894600-137905200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:137897800-137905200	Weak transcription	Pancreas	Pancrea
6	chr7:137901200-137906200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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