Variant report

Variant	rs61272163
Chromosome Location	chr7:137911070-137911071
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1074096	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531545	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12536908	0.83[EUR][1000 genomes]
rs12538071	0.86[ASN][1000 genomes]
rs12538075	0.86[ASN][1000 genomes]
rs12540428	0.89[ASN][1000 genomes]
rs1602106	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2087468	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4142643	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56250738	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57484232	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57501836	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60045404	0.89[ASN][1000 genomes]
rs60139929	0.89[ASN][1000 genomes]
rs6467747	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6953434	0.83[EUR][1000 genomes]
rs6967735	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73452738	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73452748	0.82[AMR][1000 genomes]
rs73452751	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73456792	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73458710	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73458718	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7777620	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7787920	0.88[ASN][1000 genomes]
rs7803515	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7806331	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34048	chr7:137724092-138213119	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831152	chr7:137884311-138033117	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137905800-137914800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:137905800-137928600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:137908600-137913600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:137909400-137911800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:137909400-137912200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:137910600-137911200	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr7:137910600-137911400	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:137910600-137911400	Enhancers	Adipose Nuclei	Adipose
9	chr7:137910600-137911400	Enhancers	HUVEC	blood vessel
10	chr7:137910600-137911400	Enhancers	K562	blood
11	chr7:137910600-137911800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr7:137910600-137911800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr7:137910600-137912400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:137910600-137913000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:137910800-137911200	Enhancers	Brain Germinal Matrix	brain
16	chr7:137910800-137911400	Enhancers	NH-A	brain
17	chr7:137910800-137912000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:137910800-137912000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:137911000-137911600	Weak transcription	Fetal Kidney	kidney
20	chr7:137911000-137914400	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:137911000-137916200	Weak transcription	Liver	Liver
22	chr7:137911000-137916400	Weak transcription	HepG2	liver

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