Variant report

Variant	rs12532793
Chromosome Location	chr7:122286505-122286506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12530951	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12533063	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12538550	0.88[EUR][1000 genomes]
rs12538945	0.82[ASN][1000 genomes]
rs1476898	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1860857	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1968146	0.89[EUR][1000 genomes]
rs1968147	0.89[EUR][1000 genomes]
rs2192024	0.82[ASN][1000 genomes]
rs2215665	0.83[ASN][1000 genomes]
rs2215668	1.00[ASN][1000 genomes]
rs2430023	0.90[EUR][1000 genomes]
rs2430028	0.89[EUR][1000 genomes]
rs2430031	0.81[ASN][1000 genomes]
rs2430032	0.82[ASN][1000 genomes]
rs2430042	0.81[ASN][1000 genomes]
rs2430044	0.83[ASN][1000 genomes]
rs2430045	1.00[ASN][1000 genomes]
rs2430047	1.00[ASN][1000 genomes]
rs2430048	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2430049	0.98[ASN][1000 genomes]
rs2430050	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs2471181	0.89[EUR][1000 genomes]
rs2471182	0.89[EUR][1000 genomes]
rs2471185	0.81[ASN][1000 genomes]
rs2471187	0.82[ASN][1000 genomes]
rs2471189	0.83[ASN][1000 genomes]
rs2471190	0.82[ASN][1000 genomes]
rs2471191	0.83[ASN][1000 genomes]
rs2471193	0.81[ASN][1000 genomes]
rs2471194	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2471195	0.83[ASN][1000 genomes]
rs2471196	0.83[ASN][1000 genomes]
rs2471197	0.83[ASN][1000 genomes]
rs2471200	0.82[ASN][1000 genomes]
rs2471202	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2471206	0.93[EUR][1000 genomes]
rs3808171	0.85[EUR][1000 genomes]
rs4727944	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73220284	0.88[EUR][1000 genomes]
rs73220288	0.84[EUR][1000 genomes]
rs7789692	0.81[ASN][1000 genomes]
rs7793961	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7794897	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7797968	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs986999	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv3346852	chr7:122284241-122287089	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3364968	chr7:122284516-122286864	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122269800-122288000	Weak transcription	HepG2	liver
2	chr7:122278600-122288200	Weak transcription	Gastric	stomach

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