Variant report

Variant	rs3808171
Chromosome Location	chr7:122262378-122262379
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12530951	0.83[EUR][1000 genomes]
rs12532793	0.85[EUR][1000 genomes]
rs12533063	0.92[EUR][1000 genomes]
rs12668581	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1476898	0.92[EUR][1000 genomes]
rs1860857	0.92[EUR][1000 genomes]
rs2058264	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2191276	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2254981	0.85[ASN][1000 genomes]
rs2430023	0.96[EUR][1000 genomes]
rs2430025	0.95[ASN][1000 genomes]
rs2430048	0.85[EUR][1000 genomes]
rs2471194	0.85[EUR][1000 genomes]
rs2471202	0.92[EUR][1000 genomes]
rs2471206	0.92[EUR][1000 genomes]
rs2471214	0.82[ASN][1000 genomes]
rs2471215	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2471216	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4727944	0.85[EUR][1000 genomes]
rs56326140	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60730410	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61594727	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61692498	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218224	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73218225	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218228	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73218230	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218231	0.85[EUR][1000 genomes]
rs73218232	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218233	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218235	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218236	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs740813	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7786557	0.90[EUR][1000 genomes]
rs7793961	0.92[EUR][1000 genomes]
rs7794897	0.84[EUR][1000 genomes]
rs7797968	0.85[EUR][1000 genomes]
rs961628	0.84[ASN][1000 genomes]
rs986999	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
2	chr7:122254800-122271400	Weak transcription	Left Ventricle	heart
3	chr7:122257600-122268800	Weak transcription	HepG2	liver

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