Variant report

Variant	rs1860857
Chromosome Location	chr7:122271993-122271994
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs12530951	0.90[EUR][1000 genomes]
rs12532793	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12533063	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12538550	0.81[EUR][1000 genomes]
rs12538945	0.98[ASN][1000 genomes]
rs1476898	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1860855	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1968146	0.83[EUR][1000 genomes]
rs1968147	0.83[EUR][1000 genomes]
rs2058264	0.80[EUR][1000 genomes]
rs2191276	0.80[EUR][1000 genomes]
rs2192018	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2215665	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2215668	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2402618	0.80[ASN][1000 genomes]
rs2430016	0.82[ASN][1000 genomes]
rs2430018	0.80[ASN][1000 genomes]
rs2430020	0.82[ASN][1000 genomes]
rs2430021	0.80[ASN][1000 genomes]
rs2430022	0.82[ASN][1000 genomes]
rs2430023	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2430028	0.83[EUR][1000 genomes]
rs2430045	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2430047	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2430048	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2430049	0.82[AFR][1000 genomes]
rs2430053	0.80[ASN][1000 genomes]
rs2471181	0.83[EUR][1000 genomes]
rs2471182	0.83[EUR][1000 genomes]
rs2471194	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2471199	0.82[ASN][1000 genomes]
rs2471200	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2471202	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2471203	0.80[ASN][1000 genomes]
rs2471206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2471207	0.82[ASN][1000 genomes]
rs2471211	0.80[ASN][1000 genomes]
rs2471212	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3808171	0.92[EUR][1000 genomes]
rs4285412	0.81[ASN][1000 genomes]
rs4727944	0.93[EUR][1000 genomes]
rs67776758	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73218224	0.80[EUR][1000 genomes]
rs73218225	0.81[EUR][1000 genomes]
rs73218228	0.84[EUR][1000 genomes]
rs73218236	0.84[EUR][1000 genomes]
rs73220284	0.81[EUR][1000 genomes]
rs7786557	0.83[EUR][1000 genomes]
rs7793961	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7794897	0.91[EUR][1000 genomes]
rs7797968	0.93[EUR][1000 genomes]
rs986999	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122269800-122288000	Weak transcription	HepG2	liver
2	chr7:122270600-122272800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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