Variant report

Variant	rs7797968
Chromosome Location	chr7:122290999-122291000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs12530951	0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12532793	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12533063	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12538550	0.90[TSI][hapmap];0.88[EUR][1000 genomes]
rs12668581	0.84[TSI][hapmap]
rs1476898	0.85[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1544594	0.92[JPT][hapmap]
rs1544595	0.92[JPT][hapmap]
rs17144752	0.90[TSI][hapmap]
rs1860855	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1860857	0.93[EUR][1000 genomes]
rs1968146	0.89[EUR][1000 genomes]
rs1968147	0.89[EUR][1000 genomes]
rs2109968	0.92[JPT][hapmap]
rs2159827	0.80[CHD][hapmap];0.92[JPT][hapmap]
rs2191276	0.84[TSI][hapmap]
rs2192017	0.84[JPT][hapmap]
rs2192018	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2192024	0.82[ASN][1000 genomes]
rs2215668	0.96[ASN][1000 genomes]
rs2251761	0.80[CHD][hapmap];0.92[JPT][hapmap]
rs2430016	0.92[JPT][hapmap]
rs2430020	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2430022	0.84[CHD][hapmap];0.92[JPT][hapmap]
rs2430023	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2430028	0.89[EUR][1000 genomes]
rs2430030	0.92[JPT][hapmap]
rs2430031	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2430042	0.92[JPT][hapmap]
rs2430044	0.90[JPT][hapmap]
rs2430045	0.96[ASN][1000 genomes]
rs2430047	0.96[ASN][1000 genomes]
rs2430048	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2430049	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.98[ASN][1000 genomes]
rs2430053	0.92[JPT][hapmap]
rs2471181	0.89[EUR][1000 genomes]
rs2471182	0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs2471189	0.84[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs2471190	0.92[JPT][hapmap]
rs2471191	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2471193	0.92[JPT][hapmap]
rs2471194	0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2471195	0.84[CHD][hapmap];0.92[JPT][hapmap]
rs2471196	0.92[JPT][hapmap]
rs2471199	0.92[JPT][hapmap]
rs2471202	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2471206	0.93[EUR][1000 genomes]
rs2471212	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs3808171	0.85[EUR][1000 genomes]
rs4285412	0.92[JPT][hapmap]
rs4727944	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73220284	0.88[EUR][1000 genomes]
rs73220288	0.84[EUR][1000 genomes]
rs7793961	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7794897	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs986999	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122288400-122293000	Weak transcription	Small Intestine	intestine
2	chr7:122289000-122292800	Weak transcription	Stomach Mucosa	stomach
3	chr7:122289600-122293000	Weak transcription	Gastric	stomach
4	chr7:122289600-122293000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links