Variant report

Variant	rs2191276
Chromosome Location	chr7:122195577-122195578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10281844	0.86[GIH][hapmap]
rs12533063	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs12668581	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13247461	0.87[GIH][hapmap];0.84[JPT][hapmap]
rs1476898	0.85[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs1860857	0.80[EUR][1000 genomes]
rs2058264	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2430023	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2471194	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs2471202	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs2471206	0.80[EUR][1000 genomes]
rs3808171	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4727942	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs55728082	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56326140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60730410	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61594727	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61692498	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73218224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73218225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73218228	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73218230	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73218231	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73218232	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73218233	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73218235	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73218236	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs740812	0.90[CHB][hapmap];1.00[YRI][hapmap]
rs740813	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7786557	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7793961	0.85[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes]
rs7797968	0.84[TSI][hapmap]
rs9918700	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3326794	chr7:122186590-122196256	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122184600-122197400	Weak transcription	Lung	lung
3	chr7:122184800-122197200	Weak transcription	Pancreas	Pancrea
4	chr7:122187800-122196200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr7:122189000-122196600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:122192600-122196800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:122192800-122196600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr7:122194200-122197000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:122194200-122197200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:122194400-122196600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links