Variant report

Variant	rs13247461
Chromosome Location	chr7:122178102-122178103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10085663	0.91[CHD][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1010497	0.81[CHD][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs10229793	0.85[ASN][1000 genomes]
rs10238396	0.81[CHD][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs10242162	0.86[CHD][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs10242371	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs10244106	0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10281844	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.85[GIH][hapmap];0.89[JPT][hapmap];0.96[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10282152	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11768210	0.84[JPT][hapmap]
rs11769986	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs12539965	0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs12668581	0.90[GIH][hapmap];0.84[JPT][hapmap]
rs1548744	0.83[ASN][1000 genomes]
rs2058264	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs2159477	0.85[ASN][1000 genomes]
rs2191276	0.87[GIH][hapmap];0.84[JPT][hapmap]
rs4236614	0.86[CHD][hapmap];0.84[JPT][hapmap];0.83[ASN][1000 genomes]
rs4628201	0.83[ASN][1000 genomes]
rs4727942	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4731061	0.81[CHD][hapmap];0.89[JPT][hapmap];0.87[ASN][1000 genomes]
rs6466820	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6466826	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs66656487	0.85[EUR][1000 genomes]
rs6959051	0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs6966216	0.86[ASN][1000 genomes]
rs6971737	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs6977209	0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs6978199	0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs740812	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs740813	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs7780324	0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs9918700	0.89[CEU][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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