Variant report

Variant	rs10282152
Chromosome Location	chr7:122243088-122243089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10085663	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1010497	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs10229793	0.86[ASN][1000 genomes]
rs10238396	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10242162	0.90[JPT][hapmap]
rs10242371	0.90[JPT][hapmap]
rs10244106	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs10281844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11768210	0.84[JPT][hapmap]
rs11769986	0.90[JPT][hapmap]
rs12539965	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs13247461	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap]
rs1548744	0.84[ASN][1000 genomes]
rs2058264	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs2159477	0.86[ASN][1000 genomes]
rs2471215	0.81[EUR][1000 genomes]
rs2471216	0.81[EUR][1000 genomes]
rs4236614	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4628201	0.88[ASN][1000 genomes]
rs4727942	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4731061	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6466820	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6466826	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs6959051	0.90[JPT][hapmap]
rs6966216	0.84[ASN][1000 genomes]
rs6971737	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs6977209	0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6978199	0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs740812	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs740813	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs7780324	0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs9918700	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
2	chr7:122231200-122246200	Weak transcription	Left Ventricle	heart
3	chr7:122237600-122258800	Weak transcription	Pancreas	Pancrea
4	chr7:122238000-122257200	Weak transcription	Fetal Lung	lung
5	chr7:122239400-122244200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:122240400-122256200	Weak transcription	Liver	Liver
7	chr7:122242800-122243200	Enhancers	Fetal Heart	heart

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