Variant report

Variant	rs4727942
Chromosome Location	chr7:122185149-122185150
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10085663	0.84[JPT][hapmap]
rs10242371	0.80[JPT][hapmap]
rs10281844	1.00[CEU][hapmap];0.80[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10282152	1.00[CEU][hapmap];0.81[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11769986	0.80[JPT][hapmap]
rs12535299	0.81[ASN][1000 genomes]
rs12668581	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13247461	1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap]
rs2191276	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs66656487	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6959051	0.80[JPT][hapmap]
rs6971737	0.80[JPT][hapmap]
rs6977209	0.80[JPT][hapmap]
rs9918700	0.84[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122183200-122192400	Weak transcription	Fetal Lung	lung
2	chr7:122184400-122185200	Enhancers	GM12878-XiMat	blood
3	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
4	chr7:122184600-122197400	Weak transcription	Lung	lung
5	chr7:122184800-122186800	Weak transcription	Ovary	ovary
6	chr7:122184800-122197200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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