Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10085663	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1010497	0.82[CHB][hapmap]
rs10238396	0.82[CHB][hapmap]
rs10244106	0.82[CHB][hapmap]
rs10281844	0.89[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10282152	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11769986	0.82[CHB][hapmap]
rs12535299	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12539965	0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs12668581	0.86[JPT][hapmap]
rs13247461	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs2191276	0.86[JPT][hapmap]
rs4236614	0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4628201	0.81[AFR][1000 genomes]
rs4727942	0.84[CEU][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs4731061	0.82[CHB][hapmap]
rs6466820	0.82[CHB][hapmap]
rs6466826	0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs66656487	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6959051	0.82[CHB][hapmap]
rs6971737	0.82[CHB][hapmap]
rs6977209	0.82[CHB][hapmap]
rs6978199	0.85[CHB][hapmap];0.81[JPT][hapmap]
rs7780324	0.87[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122217600-122265600	Weak transcription	Aorta	Aorta
2	chr7:122231200-122246200	Weak transcription	Left Ventricle	heart
3	chr7:122237600-122258800	Weak transcription	Pancreas	Pancrea
4	chr7:122238000-122257200	Weak transcription	Fetal Lung	lung
5	chr7:122239400-122244200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:122240400-122256200	Weak transcription	Liver	Liver

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