Variant report

Variant	rs12668581
Chromosome Location	chr7:122184302-122184303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122183722..122186145-chr7:122188778..122190571,2	K562	blood:
2	chr7:122182067..122184519-chr7:122256658..122258935,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10281844	0.84[GIH][hapmap]
rs12533063	0.85[CEU][hapmap]
rs13247461	0.90[GIH][hapmap];0.84[JPT][hapmap]
rs1476898	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs2058264	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2191276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2430023	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2471194	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs2471202	0.85[CEU][hapmap]
rs3808171	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4727942	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs55728082	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56326140	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60730410	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61594727	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61692498	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73218224	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73218225	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73218228	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73218230	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218231	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73218232	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73218233	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73218235	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73218236	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs740812	0.90[CHB][hapmap];0.94[YRI][hapmap]
rs740813	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.94[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7786557	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7793961	0.85[CEU][hapmap];0.84[TSI][hapmap]
rs7797968	0.84[TSI][hapmap]
rs9918700	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122183200-122192400	Weak transcription	Fetal Lung	lung

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