Variant report

Variant	rs55728082
Chromosome Location	chr7:122167636-122167637
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11768210	0.82[ASN][1000 genomes]
rs12668581	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2058264	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2191276	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56326140	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60730410	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73218224	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73218225	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73218228	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73218230	0.87[ASN][1000 genomes]
rs73218235	0.88[ASN][1000 genomes]
rs73218236	0.83[EUR][1000 genomes]
rs740812	0.92[ASN][1000 genomes]
rs740813	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7786557	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122155800-122171000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:122160400-122170800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:122164600-122168600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:122164600-122171000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr7:122167600-122168000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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