Variant report

Variant	rs7786557
Chromosome Location	chr7:122206218-122206219
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11768210	0.86[ASN][1000 genomes]
rs12533063	0.83[EUR][1000 genomes]
rs12668581	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1476898	0.83[EUR][1000 genomes]
rs1860857	0.83[EUR][1000 genomes]
rs2058264	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2191276	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2430023	0.86[EUR][1000 genomes]
rs2471202	0.83[EUR][1000 genomes]
rs2471206	0.83[EUR][1000 genomes]
rs3808171	0.90[EUR][1000 genomes]
rs55728082	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56326140	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60730410	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61594727	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61692498	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218224	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218225	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73218228	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73218230	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73218231	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218232	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218233	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73218235	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73218236	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs740812	0.96[ASN][1000 genomes]
rs740813	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7793961	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:122197800-122218600	Weak transcription	Lung	lung
4	chr7:122198000-122229000	Weak transcription	Fetal Lung	lung
5	chr7:122200600-122219400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr7:122204400-122207800	Weak transcription	Pancreas	Pancrea
7	chr7:122206000-122207000	Enhancers	Stomach Mucosa	stomach

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