Variant report

Variant	rs2058264
Chromosome Location	chr7:122196559-122196560
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10085663	0.85[JPT][hapmap]
rs1010497	0.90[JPT][hapmap]
rs10238396	0.90[JPT][hapmap]
rs10242162	0.89[JPT][hapmap]
rs10242371	0.86[JPT][hapmap]
rs10244106	0.90[JPT][hapmap]
rs10281844	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10282152	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11768210	0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs11769986	0.86[JPT][hapmap]
rs12533063	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs12539965	0.81[JPT][hapmap]
rs12668581	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13247461	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs1476898	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs1860857	0.80[EUR][1000 genomes]
rs2191276	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2430023	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2471194	0.85[CEU][hapmap]
rs2471202	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs2471206	0.80[EUR][1000 genomes]
rs3808171	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4236614	0.85[JPT][hapmap]
rs4731061	0.90[JPT][hapmap]
rs55728082	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56326140	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60730410	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61594727	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61692498	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6466820	0.85[JPT][hapmap]
rs6466826	0.85[JPT][hapmap]
rs6959051	0.86[JPT][hapmap]
rs6971737	0.86[JPT][hapmap]
rs6977209	0.86[JPT][hapmap]
rs6978199	0.89[JPT][hapmap]
rs73218224	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73218225	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73218228	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73218230	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73218231	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73218232	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73218233	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73218235	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73218236	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs740812	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[ASN][1000 genomes]
rs740813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7780324	0.85[JPT][hapmap]
rs7786557	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7793961	0.85[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122184400-122226000	Weak transcription	Left Ventricle	heart
2	chr7:122184600-122197400	Weak transcription	Lung	lung
3	chr7:122184800-122197200	Weak transcription	Pancreas	Pancrea
4	chr7:122189000-122196600	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:122192600-122196800	Weak transcription	Stomach Smooth Muscle	stomach
6	chr7:122192800-122196600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr7:122193200-122219200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr7:122194200-122197000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:122194200-122197200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:122194400-122196600	Weak transcription	Fetal Lung	lung
11	chr7:122196400-122197400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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