Variant report

Variant	rs10242371
Chromosome Location	chr7:122157492-122157493
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:122152931..122155530-chr7:122156970..122159259,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10085663	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs1010497	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10229793	0.87[ASN][1000 genomes]
rs10238396	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10242162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10244106	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10281844	0.90[JPT][hapmap]
rs10282152	0.90[JPT][hapmap]
rs11768210	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11769986	0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12539965	0.82[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs13247461	0.89[JPT][hapmap]
rs1548744	0.85[ASN][1000 genomes]
rs2058264	0.86[JPT][hapmap]
rs2159477	0.87[ASN][1000 genomes]
rs4236614	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4628201	0.85[ASN][1000 genomes]
rs4727942	0.80[JPT][hapmap]
rs4731061	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6466820	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6466826	0.90[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs66656487	0.81[ASN][1000 genomes]
rs6959051	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6966216	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6971737	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6977209	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6978199	0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs740812	0.85[JPT][hapmap]
rs740813	0.86[JPT][hapmap]
rs7780324	0.90[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122140200-122159000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:122154000-122160800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:122155800-122157600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:122155800-122171000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:122156200-122157600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:122156200-122157800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:122156400-122158800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:122156600-122157800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:122156600-122158600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:122157200-122161800	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr7:122157200-122162000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr7:122157200-122162200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr7:122157400-122162200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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